Analysis of Gene Expression using Modified Relative Codon Bias Strength in Nanoarchaeum Equitans
نویسندگان
چکیده
منابع مشابه
tRNA-alike in Nanoarchaeum equitans ?
The recent algorithm for five split tRNA-genes in N.equitans is new . It locates missing tRNA-trp, tRNA-imet, tRNA-glu and tRNA-his . But the split tRNA-trp(CCA) solution is anomalous ; the tRNA-imet lacks cognition elements for aminoacylation . In view therefore we present here alternate non-split composite solutions for tRNA-trp, tRNA-imet, tRNA-glu and tRNA-his .
متن کاملRelative Codon Adaptation: A Generic Codon Bias Index for Prediction of Gene Expression
The development of codon bias indices (CBIs) remains an active field of research due to their myriad applications in computational biology. Recently, the relative codon usage bias (RCBS) was introduced as a novel CBI able to estimate codon bias without using a reference set. The results of this new index when applied to Escherichia coli and Saccharomyces cerevisiae led the authors of the origin...
متن کاملThe basal phylogenetic position of Nanoarchaeum equitans (Nanoarchaeota).
Using sequences of ribosomal RNA from organisms belonging exclusively to the Archaea domain and by means of two methods to remove the phylogenetic noise, we investigate the phylogenetic position of Nanoarchaeum equitans. The results obtained are compatible with the hypothesis that N. equitans represents a new phylum within the Archaea domain because the characteristic long branch of N. equitans...
متن کاملIdentification of Synonymous Codon Usage Bias in the Pseudorabies Virus UL31 Gene
Background: Little knowledge of synonymous codon usage pattern of pseudorabies virus (PRV) genome, especially the UL31 gene in the process for its evolution is available. Objectives: In the present study, the codon usage bias between PRV UL31 sequence and the UL31-like sequences was identified. Materials and Methods: We used a comprehensive analysi...
متن کاملPredicting Gene Expression Level from Relative Codon Usage Bias: An Application to Escherichia coli Genome
We present an expression measure of a gene, devised to predict the level of gene expression from relative codon bias (RCB). There are a number of measures currently in use that quantify codon usage in genes. Based on the hypothesis that gene expressivity and codon composition is strongly correlated, RCB has been defined to provide an intuitively meaningful measure of an extent of the codon pref...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Biosciences, Biotechnology Research Asia
سال: 2017
ISSN: 0973-1245,2456-2602
DOI: 10.13005/bbra/2510